Nucleic Acids Res 2005, 33:D294-D296.PubMedCrossRef 14. Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM: The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 2009, 37:D141-D145.PubMedCrossRef 15. Seshadri R, Kravitz SA, Smarr L, Gilna P, Frazier Selleck Autophagy inhibitor M: CAMERA: a community resource for metagenomics. PLoS Biol 2007, 5:394–397.CrossRef 16. Bru D, Martin-Laurent F, Philippot L: Quantification of the detrimental effect of a single primer-template mismatch by real-time PCR using the 16S rRNA gene as an example. Appl Environ Microb 2008,
74:1660–1663.CrossRef 17. Wu JH, Hong PY, Liu WT: Quantitative effects of position and type of single mismatch on single base primer extension. J Microbiol Meth 2009, 77:267–275.CrossRef 18. Frank JA, Reich CI, Sharma S, Weisbaum JS, Wilson BA, Olsen GJ: Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. Appl Environ Microb 2008, 74:2461–2470.CrossRef
19. Humblot C, Guyot J-P: Pyrosequencing of tagged 16S rRNA gene amplicons for rapid deciphering of the microbiomes of fermented foods learn more such as pearl millet slurries. Appl Environ Microb 2009, 75:4354–4361.CrossRef 20. Forney LJ, Gajer P, Williams CJ, Schneider GM, Koenig SSK, McCulle SL, Karlebach S, Brotman RM, Davis CC, Ault K, Ravel J: Comparison of self-collected and physician-collected vaginal swabs for microbiome analysis. J Clin Microbiol 2010, 48:1741–1748.PubMedCrossRef 21. Lauber CL, Hamady M, Knight R, Fierer N: Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microb 2009, 75:5111–5120.CrossRef 22. Bai YH, Sun QH, Zhao C, Wen DH, Tang XY: Bioaugmentation treatment for coking wastewater containing pyridine and quinoline in a sequencing batch reactor. Appl Microbiol Biot 2010, 87:1943–1951.CrossRef 23. Tan YF, Ji GD: Bacterial community structure and dominant
bacteria in activated sludge from a 70 degrees C ultrasound-enhanced anaerobic reactor for treating carbazole-containing wastewater. Bioresource Technol L-NAME HCl 2010, 101:174–180.CrossRef 24. Miller W, Hayes VM, Ratan A, Petersen DC, Wittekindt NE, Miller J, Walenz B, Knight J, Qi J, Zhao F, et al.: Genetic diversity and population structure of the endangered marsupialSarcophilus harrisii(Tasmanian devil). P Natl Acad Sci USA 2011, 108:12348–12353.CrossRef 25. Ayyadevara S, Thaden JJ, Reis RJS: Discrimination of primer 3′-nucleotide mismatch by Taq DNA polymerase during polymerase chain reaction. Anal Biochem 2000, 284:11–18.PubMedCrossRef 26. Huang MM, Arnheim N, Goodman MF: Extension of base mispairs by Taq DNA polymerase: implications for single nucleotide discrimination in PCR. Nucleic Acids Res 1992, 20:4567–4573.PubMedCrossRef 27.