The PCR was carried out in a total volume of MX69 order 25 μl PCR reaction containing 10 pmol of each primer, 2.5 μl of deoxy-ribonucleoside triphosphate, 1 × PCR buffer, 1 unit of Taq polymerase

(Fermantas) and 2 μl of template cDNA. The primer sequences used for amplification of RASSF1A were 5′-CTTTTACCTGCCCAAGGA TGC-3′ and 5′-CACCTCCCCAGAGTCATTTTC-3′. The primers for GAPDH (5′-CATGACAACTTTGGTATCGTG-3′ and 5′-GTGTCGCTGTTGAAGTCGTCAG A-3′) were used as internal control, and the annealing temperature was 55°C for RASSF1A and 58°C for GAPDH. After 25 cycles, 8 μl of PCR products were loaded onto a 1.5% agarose gels, stained with GoldView, and visualized under UV illumination. Sodium bisulfite modification High-molecular weight genomic DNA from primary tumor biopsies and normal nasopharyngeal epithelial tissues were subjected to bisulfite modification by using the CpGenome™ DNA Modification Kit (Chemicon International, USA) according to the manufacture’s instruction; HDAC inhibitor treatment of genomic DNA with sodium bisulfite converts unmethylated cytosines, but not methylated cytosines to uracil, which is then converted to thymidine during the subsequent methylated specific PCR steps [21]. Methylated specific PCR The methylation status of RASSF1A promoter region was detected by methylated-specific

PCR assay, PCR primers that distinguishing unmethylated (U) and methylated (M) DNA sequences were described by Burbee et al.[22]. The primers used to detect the methylated form were 5′-GGGTTTTGCGAGAGCGCG-3′(forward) https://www.selleckchem.com/HDAC.html and 5′-GCTAACAAACGCGAACCG-3′(reverse), and the primers to detect the unmethylated form were 5′-GGTTTTGTGAGAGTGTGTTTAG-3′ (forward) and 5′-CACTAACAAACACAAACCAAAC-3′ (reverse). Each primer set generated a 169-bp product. Genomic DNAs, modified by bisulfite treatment, were used as a template for methylated specific PCR (MSP). Each MSP reaction incorporated 2 μl of sodium

bisulfite-modified Baricitinib DNA, 10 pmol of each primer, 2.5 μl of deoxy-ribonucleoside triphosphate, 1 × PCR buffer, MgCl2 and 1 unit Taq polymerase (Fermantas) in a final PCR reaction volume of 25 μl. The annealing temperature was 64°C for methylation-specific and 59°C for unmethylation-specific primers. DNA modified by methylase Sss I was used as a positive control and water was included as negative control. The PCR products were separated on 2% agarose gels stained with GoldView fluorochrome (Saibaisheng) and visualized under UV illumination. 5-Aza-2′-deoxycytidine treatment To determine whether RASSF1A expression could be restored by the demethylating agents, the NPC cell line CNE-2, which showed to have lower expression of RASSF1A than CNE-1 in our studies, was subjected to 5-aza-2′-deoxycytidine treatment. 2 × 105 CNE-2 cells were plated in a six-well plate and incubated for 4 d with 0, 1, 3, 5, 7, 10 μmol/L 5-aza-2′-deoxycytidine (Sigma). The medium and drug were replaced every 24 h.